Publications

Queued projects:
  • Malin's CRH paper (uses WGCNA, Lin Chang)
Publications (In Progress)
  1. Presson AP, Ayers KL, Herrick J, Slattery M. "Lasso analysis of candidate gene SNPs with an application to a large-scale breast cancer study." [To be submitted]
  2. Kim SE, Presson AP, Shih W, Naliboff B, Tillisch K, Mayer EA, Chang L. "Body mass index (BMI) is associated with GI symptoms but not somatic symptom severity in a demographically diverse IBS patient population." [To be submitted]
  3. Orand A, Shih W, Ju T, Presson AP, Heendeniya N, Mayer EA, Naliboff B, Chang L. "Catecholaminergic Gene Polymorphisms are Associated with Autonomic Nervous System Function in Irritable Bowel Syndrome." [To be submitted]
  4. Shakib, JH, Korgenski K, Presson AP, Xiaoming S, Varner MW, Pavia AT, Byington CL. "Influenza Outcomes in Infants Born to Women Reporting Influenza Vaccine During Pregnancy." [To be submitted to JAMA Pediatrics]
  5. Beckmann J, Curtis S, Presson AP, Stuart AR, Higgins TF, Kubiak EN. "Specific radiographic fracture characteristics can predict operative treatment of lateral compression type 1 (LC-1) fractures." [Submitted to The Journal of Orthopaedic Trauma, 6/1/14]
  6. Kubiak EN, Stuart AR, Presson AP, Doble J, Higgins T. "Anatomic landmarks facilitate predictable partial lower limb loading during aquatic weight bearing." [Under revision J of Geriatric Physical Therapy, 4/13]

Peer-Reviewed Publications: Search Pubmed

  1. Wells KM, Lee YJ, Erdene S, Erdene S, Sanchin U, Sergelen O, Presson A, Zhang C, Rodriguez B, deVries C, Price R.Expansion of laparoscopic cholecystectomy in a resource limited setting, Mongolia: a 9-year cross-sectional retrospective review. Lancet. 2015 Apr 27;385 Suppl 2:S38. PMID:26313086
  2. Patel DP, Brant WO, Myers JB, Presson AP, Johnstone EB, Dorais JA, Aston KI, Carrell DT, Hotaling JM.The safety and efficacy of clomiphene citrate in hypoandrogenic and subfertile men. Int J Impot Res. 2015 Aug 20. PMID:26289907
  3. Orand A, Gupta A, Shih W, Presson AP, Hammer C, Niesler B, Heendeniya N, Mayer EA, Chang L.Catecholaminergic Gene Polymorphisms Are Associated with GI Symptoms and Morphological Brain Changes in Irritable Bowel Syndrome.PLoS One. 2015 Aug 19;10(8):e0135910. PMID: 26288143
  4. Swords DS, Mone MC, Zhang C, Presson AP, Mulvihill SJ, Scaife CL.Initial Misdiagnosis of Proximal Pancreatic Adenocarcinoma Is Associated with Delay in Diagnosis and Advanced Stage at Presentation. J Gastrointest Surg. 2015 Aug 19. PMID: 26286368
  5. Haller JM, O'Toole R, Graves M, Barei D, Gardner M, Kubiak E, Nascone J, Nork S, Presson AP, Higgins TF. How much articular displacement can be detected using fluoroscopy for tibial plateau fractures? Injury. 2015 Jul 10. PMID: 26199030
  6. Abtahi AM, Presson AP, Zhang C, Saltzman CL, Tyser AR. Association Between Orthopaedic Outpatient Satisfaction and Non-Modifiable Patient Factors. J Bone Joint Surg Am. 2015 Jul 1;97(13):1041-8. PMID:26135070
  7. Patel DP, Elliott SP, Voelzke BB, Erickson BA, McClung CD, Presson AP, Zhang C, Myers JB; Trauma and Urologic Reconstruction Network of Surgeons (TURNS). Patient-Reported Sexual Function After Staged Penile Urethroplasty. Urology. 2015 Jun 17. PMID: 26199158
  8. Hotaling JM, Patel DP, Vendryes C, Lopushnyan NA, Presson AP, Zhang C, Muller CH, Walsh TJ. Predictors of sperm recovery after cryopreservation in testicular cancer. Asian J Androl. 2015 May 22. PMID:25999362
  9. Stiers J, Aguayo C, Siatta A, Presson AP, Perez R, DiGeronimo, R. Potential and Actual Neonatal Organ and Tissue Donation After Circulatory Determination of Death. JAMA Pediatr. 2015 May 11. PMID:25961731
  10. Summers SJ, Patel DP, Hamilton BD, Presson AP, Fisher MA, Lowrance WT, Southwick AW. An antimicrobial prophylaxis protocol using rectal swab cultures for transrectal prostate biopsy. World J Urol. 2015 May 3. PMID:25935330
  11. Du K, Mulroy EE, Wallis MC, Zhang C, Presson AP, Cartwright PC. Enterocystoplasty 30-day outcomes from National Surgical Quality Improvement Program Pediatric 2012. J Pediatr Surg. 2015 Apr 25. PMID: 25957024
  12. Patel DP, Redshaw JD, Majercik SD, Gaither TW, Crag J, Gardner S, Presson AP, Zhang C, Smith TG, Breyer BN, Hotaling JM, Brant WO, Myers JB (2015). High Grade Renal Injuries are Often Isolated in Sports-related Trauma Injury. Injury. PMID:25769197
  13. Patel DP, Brant WO, Myers JB, Zhang C, Presson AP, Johnstone EB, Dorais JA, Aston KI, Carrell DT, Hotaling JM (2015).Sperm Concentration Is Poorly Associated With Hypoandrogenism in Infertile Men.Urology. 2015 Feb 28. PMID: 25735445
  14. Williams CN, Riva-Cambrin J, Presson AP, Bratton SL (2015). Hyponatremia and poor cognitive outcome following pediatric brain tumor surgery. J of Neurosurgery: Pediatrics. 2015 May;15(5):480-7. PMID:25723724
  15. Kubiak EN, Haller JM, Kemper DD, Presson AP, Higgins TF, Horwitz DS (2015). Does the lateral plate need to overlap the stem to mitigate stress concentration when treating Vancouver C periprosthetic supracondylar femur fracture? J Arthroplasty. Jan;30(1):104-8 Epub 2014 Jul 24. PMID: 25443562
  16. Arokium H, Kamata M, Kim S, Kim N, Liang M, Presson AP, Chen IS (2014). Deep Sequencing Reveals Low Incidence of Endogenous LINE-1 Retrotransposition in Human Induced Pluripotent Stem Cells. PLoS ONE, 9(10), e108682. PMID:25289675 / PMCID:PMC4188539
  17. Redshaw JD, Broghammer JA, Smith TG 3rd, Voelzke BB, Erickson BA, McClung CD, Elliott SP, Alsikafi NF, Presson AP, Aberger ME, Craig JR, Brant WO, Myers JB (2014). Intralesional Injection of Mitomycin C at the Time of Transurethral Incision of Bladder Neck Contracture May Offer Limited Benefit: From the TURNS Study Group. J Urol, (14), 04359-6. PMID:25200807
  18. Tianero MD, Kwan JC, Wyche TP, Presson AP, Koch M, Barrows LR, Bugni TS, Schmidt EW (2014). Species specificity of symbiosis and secondary metabolism in ascidians. ISME, Epub (Aug 29). PMID:25171330
  19. Burks RT, Presson AP, Weng HY (2014). An analysis of technical aspects of the arthroscopic bankart procedure as performed in the United States. Arthroscopy, 30(10), 1246-53. PMID:25064758
  20. Summers SJ, Elliott S, McAdams S, Oottamasathien S, Brant WO, Presson AP, Fleck J, West J, Myers JB (2014). Urologic problems in spina bifida patients transitioning to adult care. J Urol, 84(2), 440-4. PMID:25065990
  21. Beckmann J, Presson AP, Curtis S, Haller JM, Stuart AR, Higgins TF, Kubiak EN. "Operative Agreement on Lateral Compression-1 Pelvis Fractures Among 111 Orthopaedic Trauma Association Members." J Orthop Trauma. 2014 Apr 30. [Epub ahead of print] PMID: 24786733
  22. Belzer JS, Williams CN, Riva-Cambrin J, Presson AP, Bratton SL. "Timing, Duration, and Severity of Hyponatremia  Following Pediatric Brain Tumor Surgery" Pediatric Critical Care Medicine 2014 Apr 25. [Epub ahead of print] PMID: 24777301
  23. Kim S, Kim N, Presson AP, Metzger ME, Bonifacino AC, Sehl M, Chow SA, Crooks GM, Dunbar CE, An DS, Donahue RE, Chen ISY. "Dynamics of long-term HSPC subtypes in non-human primates revealed by a decade-long clonal-tracking study." Cell Stem Cell 2014 Apr 3. [Epub ahead of print] PMID: 24702996
  24. Slattery ML, Herrick JS, Torres-Mejia G, John EM, Giuliano AR, Hines LM, Stern MC, Baumgartner KB, Presson AP, Wolff RK."Genetic variants in interleukin genes are associated with breast cancer risk and survival in a genetically admixed population: The Breast Cancer Health Disparities Study." Carcinogenesis 2014 Mar 26. PMID:24670917
  25. Redshaw JD, Elliott SP, Rosenstein DI, Erickson BA, Presson AP, Conti SL, McAdams S, Nguyen A, West JM, Brant WO, Myers JB. "Procedures Needed to Maintain Functionality of Adult Continent Catheterizable Channels: A Comparison of Continent Cutaneous Ileal Cecocystoplasty with Tunneled Catheterizable Channels." J Urol. 2014 Mar 20. PMID:24657838
  26. Williams CN, Belzer JS, Riva-Cambrin J, Presson AP, Bratton SL. (2014) "The Incidence of Hyponatremia and Associated Neurologic Sequelae in Post-operative Children with Intracranial Neoplasms." J Neurosurgery Pediatrics 2014 Jan 10. PMID: 24410125
  27. Null DM, Alvord J, Leavitt W, Wint A, Dahl MJ, Presson AP, Lane RH, DiGeronimo RJ, Yoder BA, Albertine KY (2013) "High Frequency Nasal Ventilation for 21 Days Maintains Gas Exchange with Lower Respiratory Pressures and Promotes Alveolarization in Preterm Lambs." Pediatric Research Dec 30. PMID: 24378898
  28. Grasberger H, Chang L, Shih W, Presson AP, Sayuk G, Newberry R, Karagiannides I, Pothoulakis C, Mayer E, Merchang JL (2013) "Identification of a functional TPH1 polymorphism associated with irritable bowel syndrome bowel habit subtypes."American Journal of Gastroenterology Sept 24. PMID: 24060757
  29. O'Neil BB, Presson AP, Gannon J, Lowrance W, Stephenson RA, Dechet CB, Tward JD, Myers JB, Brant WO (2013) "Climacturia and Orgasm Function after Definitive Treatment for Prostate Cancer." J Urology Sept 16. PMID: 24050893
  30. Friedhelm B, Berner L, Dechet C, Presson A, Pycha A (2013) [Does the Surgeon have an Influence on Clinical Voiding Parameters and Postoperative Sexual Function after TURP?]. Aktuelle Urol. Sep 16; 44(5):370-4. German. PMID: 24043536
  31. Su AM, Shih W, Presson AP, Chang L (2013) "Characterization of symptoms in irritable bowel syndrome with mixed bowel habit pattern." Neurogastroenterology and Motility Aug 29. PMID: 23991913
  32. O'Neil BB, Cartwright PC, Maves C, Hoeg K, Presson AP, Wallis MC (2013) "Reliability of Voiding Cystourethrogram for the Grading of Vesicoureteral Reflux." Journal of Pediatric Urology Jul 24. PMID: 23891023
  33. Presson AP, Partyka G, Jensen KM, Devine OJ, Rasmussen S, McCabe L, McCabe ERB. "Current estimate of Down syndrome population prevalence in the United States."  Journal of Pediatrics 2013 Jul 22. PMID: 23885965
  34. Cheng P, Shih W, Alberto M, Presson AP, Licudine A, Mayer EA, Naliboff BD, Chang L (2013) "Autonomic Response to a Visceral Stressor is Dysregulated in Irritable Bowel Syndrome and Correlates with Duration of Disease." Neurogastroenterology and Motility 2013 Jul 3. PMID: 23822743
  35. Hardee MJ, Lowrance W, Brant WO, Presson AP, Stevens MH, Myers JB (2013) "High Grade Renal Injuries: Application of Parkland Hospital’s Predictors of Intervention for Renal Hemorrhage to a Large Series of Patients with Blunt Renal Trauma." Journal of Urology189(5):1771-6. PMID: 23219543
  36. Myers JB, Taylor MB, Brant WO, Stevens M, Presson AP, Lowrance W, Willis C, Nirula R, Morris S (2013) "Process Improvement in Trauma: Traumatic Bladder Injuries and Compliance with Recommended Imaging Evaluation." J Trauma Acute Care Surg 74(1):264-9. PMID: 23147187
  37. Hamilton LJ, Lerner CF, Presson AP, Klitzner TS (2013) "Effects of a Medical Home Program for Children with Special Health Care Needs on Parental Perceptions of Care in an Ethnically Diverse Patient Population." Matern Child Health J Apr;17(3):463-9. PMID: 22569944
  38. Bradford K, Shih W, Videlock E, Presson AP, Naliboff BD, Mayer EA, Chang L (2012) "Association between Early Life Trauma Events and Irritable Bowel Syndrome." Clinical Gastroenterology and Hepatology Apr; 10(4):385-90. PMID: 22178460 
  39. Chang L, Adeyemo M, Karagiannidis I, Videlock EJ, Bowe C, Shih W, Presson AP, Yuan P, Cortina G, Gong H, Singh S, Licudine A, Mayer M, Tache Y,Pothoulakis C, Mayer EA (2012) "Serum and colonic mucosal immune markers in irritable bowel syndrome." American Journal of Gastroenterology Feb; 107(2):262-72. PMID: 22158028
  40. Presson AP, Kim N, Xiaofei Y, Chen IS and Kim S (2011) "Methodology and software to detect viral integration site hot-spots." BMC Bioinformatics 12:367. PMID: 21914224 [Highly Accessed]
  41. Presson AP, Yoon NK, Mah V, Alavi M, Maresh E, Goodglick L, Chia D, Horvath S (2011) "Protein expression based multimarker analysis of breast cancer patients." BMC Cancer 11(1):230. PMID: 21651811 [Highly Accessed]
  42. Maresh EL, Mah V, Alavi M, Presson A, Bagryanova L, Yoon NK, Chang G, Elshimali Y, Shevlin L, Zhang L, Hong L, Schatz S, Li A, Fu Maoyong, Wadehra M, Chia D, Horvath S, Goodglick L (2011) "Development and Application of Tissue Microarrays for Biomarker Studies." Forum on Immunopathological Diseases & Therapeutics 2(2):104.
  43. Kim S, Kim N, Presson AP, An DS, Mao SH, Bonifacino AC, Donahue RE, Chow SA, Chen IS (2010) "High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones." Journal of Virology 84(22):11771-80. PMID: 20844053
  44. Loo KK, Li Y, Tan Y, Luo X,  Presson A, Shih W (2010) "Prenatal Anxiety is Associated with Male Child Preference among Expectant Mothers at 10-20 Weeks Gestation in Xiangyun County, Yunnan, China." International Journal of Gynecology & Obstetrics 111(3):229-32. PMID: 20817176
  45. Henderson-MacLennan NK, Papp JC, Talbot CC, McCabe ERB, Presson AP (2010) "Pathway Analysis Software: Annotation Errors and Solutions." Molecular Genetics and Metabolism 101(2-3):134-40. PMID: 20663702
  46. Presson A, Moore T, Kempert P (2010) "Efficacy of High Dose Chemotherapy and Autologous Stem Cell transplant for Recurrent Wilms' Tumor: A Meta-Analysis." Journal of Pediatric Hematology/Oncology 32(6):454-61. PMID: 20505538
  47. Nickerson DW, Presson AP, Weigt SS, Gregson AL, Belperio JA, and Gomperts BN (2009) "Quantification of Cytokeratin 5 mRNA Expression in the Circulation of Healthy Human Subjects and after Lung Transplantation." PLoS One 4(6): e5925. PMID: 19529775
  48. Loo KK, Luo X, Su H, Presson A, Li Y (2009) "Dreams of Tigers and Flowers: Child Gender Predictions and Preference in an Urban Mainland Chinese Sample during Pregnancy." Women & Health 49(1): 50–65. PMID: 19485234
  49. Presson AP, Sobel E, Papp JC, Suarez CJ, Whistler T, Rajeevan MS, Vernon SD and Horavth S (2008) "Integrated weighted gene co-expression network analysis with an application to chronic fatigue syndrome." BMC Systems Biology, 2:95. PMID: 18986552 [Highly Accessed]
  50. Presson AP, Sobel E, Pajukanta P, Plaisier C, Weeks DE, Alberg K, Papp JC (2008) "Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis." BMC Bioinformatics. 9:318. PMID: 18644149
  51. Presson AP, Sobel E, Lange K, Papp JC (2006) "Merging microsatellite data." Journal of Computational Biology. 13:1131-1147. PMID: 16901233

Other Publications

  1. Fuller T, Langfelder P, Presson A and Horvath H. Review of Weighted Gene Coexpression Network Analysis.  In: Lu HHS, Scholkopf B, Zhao H, eds. Handbook of Statistical Bioinformatics. 1st Ed. Berlin, Heidelberg: Springer; 2011:369-379.
  2. Presson A, Sobel E, Papp J and Horvath S. Co-expression Modules and Genes Related to Chronic Fatigue Syndrome Severity. In: McConnell P, Lim S, Cuticchia AJ, eds. Methods of Microarray Data Analysis VI. Scotts Valley, California: CreateSpace Publishing; 2009:141-159.
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